rs3676401 SNP Detail

Summary

• ID
  rs3676401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147616338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATT AAAGTACAAA CAGCACCAGG
  R
  CAATCTACAT TTCGTTCAAT CCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5052405	WI_WGS_4_142949034	WI	MOUSE	f	SNP		G	A
ss147967999	ENSMUSSNP1828965	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321414800	CHEV_4_146905990	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3676401					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147616338 () rs orientation: forward

Symbol	Name	Function Class
Gm69897	predicted gene, 69897	within coordinates
Rr604496	regulatory region 604496	1321 bp distal