rs3675534 SNP Detail

Summary

• ID
  rs3675534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149070136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCGG CATTCACCCA GCCAGAGGGA
  R
  GGAGGTCAGG CGATAGAGCA GCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5051528	WI_WGS_4_144362648	WI	MOUSE	f	SNP	G			A
ss45627034	mCV22665260	ABI	CRAMUS_MOUSE	f	SNP		G	G	A	G
ss148024646	ENSMUSSNP1893254	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss321424115	CHEV_4_148359788	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3675534					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149070136 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr1858	regulatory region 1858			within coordinates
Rr604814	regulatory region 604814			within coordinates
Rr604815	regulatory region 604815			762 bp distal