rs36754928 SNP Detail

Summary

• ID
  rs36754928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69765428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTTAAAA ATGAAGACAC
  ACACACACAC ACACACACAC ACACACACAC ACACATTTGC CTGCAAAACT TTTTTACTGT
  CTTTGTTAAT TGGCCATGGA CTTATAAAGG GTAGTTTTTA TTTTAAAATT ACGAAAGTTG
  TAAGCAGTAG GGAGCTACAG ACTGGCTAAT TTCTACTTGA CGCACAGTAA AATTCTAAAC
  R
  TGCATTTGCC TTAACTTGAC ATTTTTAATT TAACTTAATT TAATTACATT GGAATTAATT
  ATTTAGTTGT TTAGAAAGAT TTGAAAAGTG AGGTTGTGTG TCTCACACAA AAAGTTTGTT
  GTTGGTCTAA GCCAGTGGTT CTCAACCTTC GGGTCTCGAT CTCTTTGGGG ATCCAAAAGG
  ACCTTTTCAC AGTGGTCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50977800	NES13927124	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36754928					SNP	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977800	NES13927124	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69765428 () rs orientation: forward

Symbol	Name	Function Class
Gm52608	predicted gene, 52608	1639 bp downstream
Rr578229	regulatory region 578229	1638 bp proximal
Rr578230	regulatory region 578230	1817 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Intron
Tssr903	transcription start site region 903	1760 bp downstream
Tssr33557	transcription start site region 33557	775 bp downstream
Tssr33558	transcription start site region 33558	1780 bp downstream