rs36753574 SNP Detail

Summary

• ID
  rs36753574
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:8578795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTATGT TCGTGTCACT
  CCAGTAGCTA GTTGTTTGTG AAAGGCTAAA TAAAATTGGT CTCAAAGCAT GTGGCAGCTA
  GCTGCACAAA CCCAGACCTG GGTGTGGTCA GCCCCACAGG GATAGTTAAT CCGAAGCAGC
  TTCCCACCAG GTTTTTTGTT TGTTTGCTTG TGTTTGTGGA AAAACACGCA CTGTTGTTAC
  S
  ATGTAATCTG TAACATTGTA TGAATGTCTG ATCCACAGAA AACACTCAAA CCCAAATGCT
  TCCAGAACCG AAGCTATTTG CCTCCTAGTT CTTGCAATTG GGAGACCATG GAGTCTGCAC
  TAACTTTTCA CACCACTAGA GGGCAATCAA TGTCTCTATG ATTGATTTTA ACCAGGCTAC
  AAACGCTAAC TGCTAAAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51431704	NES14443121	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36753574					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51431704	NES14443121	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8578795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12960	CpG island 12960	1989 bp distal
Rr374470	regulatory region 374470	1472 bp downstream
Rr573294	regulatory region 573294	within coordinates
Rr573295	regulatory region 573295	129 bp proximal
Stmn2	stathmin-like 2	Intron