rs36746822 SNP Detail

Summary

• ID
  rs36746822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123028549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAGCTACA AAGGCGGTGA CCCATGGGCT TCATAGAGGC
  CTAGATTCAT TTTAGCTATA GCTATGCAAC AAGAAAGTAA CCTTTGATGC CTTCCAATAC
  Y
  GGCACAGAAT TCTACAGTTC CATGTTAACA TTTGATGAAA AGTTTTTTAC TTTCTTGCTT
  TCTAACTTCA TTTTAGCTGA ATGCCAGTTC GAATCTAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51024638	NES13910108	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	C	C	T	T		T		T	T	C		T
ss135760872	ENSMUSSNP5464169	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C											C
ss320918232	CHEV_3_122937818	CHEVERUD	SCREENING_POP	f	SNP												T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36746822					SNP	T	T	C	T	C	T	C	C	C	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024638	NES13910108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123028549 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			29 bp distal
Rr584474	regulatory region 584474			201 bp distal
Rr584475	regulatory region 584475			1186 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant
Tssr35497	transcription start site region 35497			1211 bp downstream
Tssr35498	transcription start site region 35498			1234 bp downstream