rs36743282 SNP Detail

Summary

• ID
  rs36743282
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68192034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCCTCT TAATCTACTG
  CATAAATGAA AATAAAATGT GTCAGAGTTT TCTTAATATT ACAATGGTGA ATCTAAACTC
  CAGTTTCAGC AATGAAACCC TCTGTTGGAT ACTATCCAAA GTCATTTGCA CAGCCCTTCA
  AGGGACTATT TAGTTTGCTC CAAGTGATTC TATGCCTTCT GTTGAACAGA GCCTAGGAAC
  K
  GAGTTGGTAA TAGCAGGCAT CATGCCACCC ACAGGTCAAT TCAGCATGAG GCATGGCAGG
  ATGCTTAATG ATAAGTTACA TACGCTCTCA AAGGATTTCC TAAACCTGCC ATTCGCTAGC
  TTTGTCATTG AGCTATGATT CCTGTAATTG AGAGAATAGA ATTCTACCTC CCAGTGAGTG
  ATATGTTGGA TCTTTCAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50976032	NES13930612	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36743282					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50976032	NES13930612	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68192034 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	697 bp distal
Schip1	schwannomin interacting protein 1	Intron