rs36740490 SNP Detail

Summary

• ID
  rs36740490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152463916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAGTTT TTCTTTCTTC
  ATGCCAAATA TGTGTGCATT CAGAGTGTGA ACATTTAGAG TGGCGTGGGA CCGGAGCATG
  TGTTGGGAAT AGCACATACC GCCCGTCTCT CAGCAGTTTC CTGCACGTGT ACTTCCAGCC
  TGTGAGGAGT GTGTGAGGCC TGGAGTTGTA ACTGCTGTAG CTATGCTGCA TAAACATGAT
  R
  TATAGATTTA AATCACACCT AACTGAAGGG AAAGCTCTAA CTTACTCTAA AAATAAGGGA
  AGTTGATTAT GATTTTCTGT TTAGTGTGCA CACTATAATT CATATTTTCT ATATTACAGA
  AATGACTGAA ATTCATCTTG TATAGCTTTG CTATGAAAGC TTTTTTCTTC ATATTTCTTT
  GAAAATTAGC CATAGTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51672659	NES14643767	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36740490					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51672659	NES14643767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152463916 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587595	regulatory region 587595			within coordinates
Rr587596	regulatory region 587596			278 bp proximal