rs36739241 SNP Detail

Summary

• ID
  rs36739241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122070162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGTGGT GGTGGTGGTG
  ATGACAACGA GCCCACGGGT GCAGGTATCA GTGATGACAA GAGCAGCCAA AGTGGTGTCC
  CTCTTGAATG TGATACCAAA CCATGCAAGT CTGAACTCAG CATGACTCAG GATACTACGG
  ACAGTCCTGT CTTATTATTT CTTAGCAGCG ATGAAAGCCA GCAGTCTGAC AGCAGTGAGA
  R
  TGAAAGGGAC ACTTTGTGTT CTGTTGAAAA CAATGGCCAA AAGGAGGCAT CAGCTGAGGA
  CCTGGAAGAT GCCGCCTGTG ACAGTGCACT GTTTGTAATT GACAAAACTC CTGGATTGAG
  TGCTGACAAA AACTTTTACC TAGAAGACAA GGCTCCGAGT GAAGTTGCTA TTGAGGAAGA
  AAAAGAGGAA GAGGAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51020912	NES13905126	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36739241					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020912	NES13905126	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122070162 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13766	CpG island 13766			1645 bp distal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Gm17494	predicted gene, 17494			within coordinates
Rr584274	regulatory region 584274			1492 bp distal
Tssr31492	transcription start site region 31492			933 bp downstream