rs3673629 SNP Detail

Summary

• ID
  rs3673629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163936984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCATTCT AGGTTCCCTG
  CCATTCTGGA ACTCACTGTG CAGTCCAGGC TGGCCTTGAA TTCTCTGAGA TCTTCTTACC
  TCAGCTCCCT GAGGACTCAG ATTACAAGTG TTAGGCACCT GTGTGGTGAT TTCTTAAAAA
  ATTATTTTTA TTATTGTTAT GTAACTCAGG TTAGGTGCTT AATTATTGAG ACAGAGTACC
  R
  CAGCATTGTC TTGATCTTGA GCTATGTTGT TCAGGTGGCC TTTGGAGTAG CTGAGGTAGA
  GGTGTCCCTG GCTTGGTAGT CACTTGAACA TTCTACTTTT GTGTGTATGG TTTAGGGTAC
  TCACATGTAA GGTAAATGTC TAGAAAGATA CTTGGTTAGA GAGATATAGA TATTTTAAAA
  AAGTTTACTA AATATTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5049606	WI_WGS_2_165044821	WI	MOUSE	f	SNP	A							G
ss37518678	NES08875665	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G		G	G	G		G	G	G	G
ss45284780	mCV23179827	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss148219255	ENSMUSSNP4060807	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3673629					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37518678	NES08875665	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163936984 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr569557	regulatory region 569557			709 bp distal
Stk4	serine/threonine kinase 4			Intron
				Noncoding-Transcript-Variant