rs36733196 SNP Detail

Summary

• ID
  rs36733196
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123031172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTCAGTC TTGGAGCACT TGGGCATGCC TCACTGCTGG
  GGCTGCTAAC ACCAGGCAAA GATCACAGAC TGCTGGACTT TTGCAGCAAA CACATTTCAC
  R
  GTGCTAGAGG GGTTACAGCT CAAATGTCTT GTGTTTGAAC ACTTGGTCTG GTGGCACCAC
  TTTTGGAGAC TGTGGAATCA TTGTGACTGT GTCTAACCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51024608	NES13910013	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	G	A	A		G	A	A	G		A
ss135760932	ENSMUSSNP2408091	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss320918249	CHEV_3_122940441	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36733196					SNP	A	A	G	A	G	A	G	G	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024608	NES13910013	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123031172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13775	CpG island 13775	1171 bp distal
Rr584475	regulatory region 584475	1097 bp distal
Rr584476	regulatory region 584476	22 bp distal
Synpo2	synaptopodin 2	1374 bp upstream
Tssr35497	transcription start site region 35497	1401 bp upstream
Tssr35498	transcription start site region 35498	1366 bp upstream