rs36730740 SNP Detail

Summary

• ID
  rs36730740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:139002241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGCCGAT CCTGAGGCAA
  AGGCCTTCTG GTCCAGGCAG ACAACTGTCC TCTGGCCGGG AGGGTGCCCG GATCGCATTA
  TGATTTTCTT ATCTGTGAAT TGAAACTTAA ATAGTTCTGG GCAAAAGCAG GTGATTGGTA
  AACATTAGTT GTTCTTCTAG TTGTTGGTTA TAAAGTACTC AATGTTCTCA GTGCAGTACC
  R
  TAACAACATC TGTTACTATT CATGATTGCA CTAGCAATAG AAAAAAGGGC TCAGTTACTC
  AAGTCAAACA ACACTGATGA AGTCTCTGGC TTATTGTAGA CAAAGAATAC AAATAGCAGC
  AGAATTAAAG ACAGGGCAAA ATAATGATAA TAATGATAAT AATAGTTACT TATTAATGGT
  TTTGAGATAG GGCTCATTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51042066	NES13901325	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36730740					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51042066	NES13901325	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:139002241 () rs orientation: forward

Symbol	Name	Function Class
Rr586256	regulatory region 586256	1520 bp proximal
Rr586257	regulatory region 586257	1605 bp proximal
Stpg2	sperm tail PG rich repeat containing 2	Intron