rs36727603 SNP Detail

Summary

• ID
  rs36727603
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149755961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACATGC ATGTACCCTG
  TTAACATTAC ATTGTGGGGC GATTAGCACA TGCCACACTT CATGCACATG TTTTGAACAA
  TTTGAGTTTT TGAAGTTATA ATTGTAAAAT ATTTTTTTGT CTTCTCTGAA GCTGATTTGC
  TCCTCCTGTA AATAATTATA CTGGTATCAT TATCTGGTAA TTTAAAACAG GGAGCATTAT
  W
  TTAAAAATGT ATGCTTTTTT GGGTTCTTTC AAAGCTCCAA TGTCATTACT AGGGATAAAG
  GCACTGACAG GGTGGTCAAC TTGAGTCCAT AAATCTCTAT GTCCAGTCAA CATTTAAAAA
  CTCTTAGATA TTCAATTGAG TTAAGCATTA AGTGGTGCAT TGGCTAGGAA GATTTCATGT
  CTACAAGGCC CACTAATAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51056652	NES13434290	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs36727603					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51056652	NES13434290	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149755961 () rs orientation: forward

Symbol	Name	Function Class
Rr587358	regulatory region 587358	244 bp proximal
Tssr32377	transcription start site region 32377	593 bp downstream