rs3672662 SNP Detail

Summary

• ID
  rs3672662
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101127018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAGCAA AAAGAGTGCT
  TTCAAAGTCA AGCCCCCAAG CGCTTCACGG CTAATCATGT GCCAAGTCAC GTGGCTAGGA
  CAATGACAGG CAGGGTCGCT GTCCACAAGA CCTTTCAATT AGGTAGACTT CTCTCATGTT
  TACACCCTTA ATGGAGCTAT GAATTATCTT TGTTTACTAG GATTAAGACA TGATCTCATC
  W
  CAGTGATTTA GAATAGCAAT TGTCAATATG GGTCTACTCC CACTGATGTC TTAGTATAAA
  ACCCTAAGAT AACCAAATTC AGGCCAAGGG CTGTAAGTGA AGCAAGATGC CCAGCATGTG
  TGGAAATACT TTATTATTTC CACCCAGGCT TATGTTCTGT GGGTGCTCCC TAGAACTGAC
  AGTGCCCTCA CGCCCAAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	CZECHII/EiJ	DBA/2J
ss5048635	WI_WGS_3_101330959	WI	MOUSE	f	SNP		A	T	A
ss135545473	ENSMUSSNP3680297	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	CZECHII/EiJ	DBA/2J
rs3672662					SNP	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101127018 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	375 bp proximal