rs36724089 SNP Detail

Summary

• ID
  rs36724089
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75462175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGGCTC TTTAAGGAAA
  ACCTCCAAAG TCCTGCAATG GATAGTGTCT GAGAGTTGAT GCAAAGCTCT TTAAGGGAAC
  AAATGTGGGC AAAGAGAGCT GCACACTACA GGCAAACATC CGATCTGTGA GCTCTAGCTA
  GAGCCTGAAG GATGTTCAAA ATCATCTTCT CTGTTCATCT CACTGTTCAT CTCAGCACTT
  M
  CACTGTAGTG ACGATGAAAC AGGACAGTAT GATGGGCCTC AGAGATACAG ACAGAGTTGG
  AGTAGGACTA AATCAAAGAC AAAACTTTTT TTGTTGTTAA AAAAGTCCTT CCATAACCAA
  CACAGCTGTG TGCCACTTAA AACTTATTTC ATACCTTTCC CAGCAAACAA CAAATGTCCA
  CACTGTCATC TAGAAAATAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51557855	NES14678949	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36724089					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51557855	NES14678949	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75462175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13269	CpG island 13269	1456 bp proximal
Pdcd10	programmed cell death 10	Intron
Rr578348	regulatory region 578348	978 bp proximal
Rr578349	regulatory region 578349	1933 bp proximal
Rr578350	regulatory region 578350	1969 bp proximal
Tssr33586	transcription start site region 33586	1921 bp downstream