rs36721817 SNP Detail

Summary

• ID
  rs36721817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152056680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGTGGT AAAAAGACAC
  AGCTTGGCAG TAGAAGGGAA GGAGAGGGTC GAAGGGCAAT GAAGTTAGGA AGCCTCTGCC
  ACTGGCTTCC AAGTTATTTC AGGAGAATGA AGGAACAGCA GAGTAGGTCG GGGTGGAGAG
  GTGATGGTTG GTACTGTCAG TCTGCTTTCA GGGCTTGTAG CAACCCTGAA GTAGTGAGCC
  R
  GTGAGGCTGT GGTACTCATG GGAGGTAAAC AAGACTGGAT GGTTACAATT GGTTATGAAA
  TCCCAAAGAA GGCACTTTGA ATAGGTTTGG TGGAAGCATT ACTCAATGAC TTAAAAGGCT
  TATTTGCCCA TTCATTCATT TTGAGACAAG GTCTCCCTGC GTGGTCTCAG AGTGGCCTTG
  AACTAACAGT CTTTGGCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51676337	NES14645123	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36721817					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676337	NES14645123	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152056680 () rs orientation: forward

Symbol	Name	Function Class
Rr587536	regulatory region 587536	within coordinates
Rr587537	regulatory region 587537	881 bp proximal
Tssr32408	transcription start site region 32408	1031 bp downstream
Usp33	ubiquitin specific peptidase 33	Intron