rs3672058 SNP Detail

Summary

• ID
  rs3672058
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154942047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAG TCCACACCCC ACACCTCCCC
  R
  TGAGCTTCCT CTGCCCTGGT GTGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5048030	WI_WGS_4_150305358	WI	MOUSE	f	SNP	G			A
ss148107719	ENSMUSSNP3910544	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss321440217	CHEV_4_154231699	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3672058					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154942047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15447	CpG island 15447	839 bp distal
Rr606279	regulatory region 606279	1380 bp distal
Rr606280	regulatory region 606280	1189 bp distal
Rr606281	regulatory region 606281	509 bp distal
Ttc34	tetratricopeptide repeat domain 34	Intron