rs3672040 SNP Detail

Summary

• ID
  rs3672040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154942031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT CCCCCACCAC TGTCAGTCCA
  Y
  ACCCCACACC TCCCCATGAG CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5048012	WI_WGS_4_150305342	WI	MOUSE	f	SNP	T			C
ss148107712	ENSMUSSNP3698468	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss321440216	CHEV_4_154231683	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3672040					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154942031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15447	CpG island 15447	823 bp distal
Rr606279	regulatory region 606279	1364 bp distal
Rr606280	regulatory region 606280	1173 bp distal
Rr606281	regulatory region 606281	493 bp distal
Ttc34	tetratricopeptide repeat domain 34	Intron