rs3671911 SNP Detail

Summary

• ID
  rs3671911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138465962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAC GACTGGTGAG GTGCTCTGTC
  Y
  GGCCTGGGGA GGAGAGTAAA CGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5047881	WI_WGS_4_136351059	WI	MOUSE	f	SNP		T	C
ss147655678	ENSMUSSNP5964645	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
ss321376640	CHEV_4_138294566	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3671911					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138465962 () rs orientation: forward

Symbol	Name	Function Class
Gm57720	predicted gene, 57720	within coordinates
Pla2g2c	phospholipase A2, group IIC	Intron
Rr603006	regulatory region 603006	1495 bp distal
Rr603007	regulatory region 603007	1094 bp distal
Rr603008	regulatory region 603008	438 bp proximal
Ubxn10	UBX domain protein 10	1484 bp upstream