rs36714566 SNP Detail

Summary

• ID
  rs36714566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83578234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGTCATAA CCAGGGGATC ATTTGGTACT ATGAGGGATA
  GACAAGTCTC CATCCACAGT TCCCTTAAGG GCCCCCAAAA CTTTATTGCC AGTTGTAGTT
  Y
  GGGCAAGACC TGCATCCAGA TAGCAAGTGA AGGCACCAGG CTGACCATCA ATGCTTTCCA
  CATTGTATTC ACCTCCATTC ACCTCCACTT GGCCTCCATA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51353359	NES13744236	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36714566					SNP	C	C	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353359	NES13744236	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83578234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	1971 bp distal
Gm7424	predicted gene 7424	within coordinates
Rr632899	regulatory region 632899	1664 bp distal
Rr632901	regulatory region 632901	1161 bp distal