rs36714175 SNP Detail

Summary

• ID
  rs36714175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146889346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAGAGACG CCTTGCACAT TTCTCCAAAT CTAAAGCACA
  TGAAAGATAT CAGCATGGAG GGCTAATTTG ATTTCCTGTT AAATGGTTGT AATTTCCCAC
  R
  TGCCCCAACA GTGAGTGCCT TCTTTCTTTA CCTGATTTGA CATCGTCAGT GTTTACTTGG
  CAAGCTTCCA TTATGTGTGT GATATGCATA TGCCCCCAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51050426	NES13900669	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	G		G	G	G		G
ss136048046	ENSMUSSNP5097096	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss321011560	CHEV_3_146846555	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36714175					SNP	A	A	A	A	A	A	A	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51050426	NES13900669	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146889346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13926	CpG island 13926	936 bp distal
Gm65492	predicted gene, 65492	within coordinates
Rr375882	regulatory region 375882	1010 bp downstream
Rr587133	regulatory region 587133	1810 bp distal
Rr587134	regulatory region 587134	975 bp distal
Rr587135	regulatory region 587135	543 bp distal
Rr587136	regulatory region 587136	within coordinates