rs36713941 SNP Detail

Summary

• ID
  rs36713941
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121925976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA CATAGAGAGA CAGAGAGATA
  K
  ACATAGACAC AGAGAAACAG AGGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51021654	NES13907299	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	G		G	T		G	G	G		G
ss135735502	ENSMUSSNP3278762	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
ss320908695	CHEV_3_121835245	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36713941					SNP	T	T	T	T	T	T	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021654	NES13907299	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121925976 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm40138	predicted gene, 40138			504 bp upstream
Gm43158	predicted gene 43158			within coordinates
Rr584240	regulatory region 584240			515 bp distal
Rr584241	regulatory region 584241			315 bp distal
Rr584242	regulatory region 584242			153 bp distal
Tssr31474	transcription start site region 31474			325 bp downstream