rs36709296 SNP Detail

Summary

• ID
  rs36709296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151796245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTAGTGAG AGCTGTTAGC TGAGTCTACA GCCTTGCTTT
  CTGGGCCCTC ATTCCCTACA GCTTTCCTTG GTTGGGTGAT GTACACTTCA CATTGTTCCC
  R
  TAAAACGTTA ACAGAGTCGG CTTTGCAGAG AGCTGAGAAT TTGACTCCAA ATCCTGTTCA
  AGTCCTGAAT TTGCCACTAG CTACATATGT GCCCTTGAGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51060804	NES13430485	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36709296					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060804	NES13430485	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151796245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13938	CpG island 13938	1895 bp proximal
Gm31881	predicted gene, 31881	within coordinates
Rr587443	regulatory region 587443	1086 bp distal
Rr587444	regulatory region 587444	1182 bp distal
Rr587445	regulatory region 587445	1871 bp proximal