rs36709240 SNP Detail

Summary

• ID
  rs36709240
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97950541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTGTGCC AGAAGCAACA
  GAGGGACACA CAGCCAAGTC CCAGCCAGCA ACCCAGACTT CAGCTCTCAA ATTCTGCTAC
  TTGAAATTTG CATAAACGTT GAAGGGAGAA AAGAAGCGCC CTGTGTCTGT CACTCTTCTA
  CTTTAGGCTC TGCAGCCATT CAGAGCATTA AACCTCGTCT GAGGGTGCAG CGGATGAGCG
  S
  GCTGCAGGCA GAAGGAGCAG GGTATGAAAA GAGTCATGTG AGTCAGACAA CAGACAGAGG
  CTTATTTGAA GAGGCTACAA AGCAACAAGT ATTGCCAATT TAAAACATTG CTTGTCAGAG
  CAAGGAGTGA AACACATTGT AGGCTGCTCA GATTACACCG TCTGGGGTAC CAGACTTAAT
  TACTCATGTT TGAGATTCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51002324	NES13912236	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	G	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36709240					SNP	C	C	C	C	C	G	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51002324	NES13912236	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97950541 () rs orientation: forward

Symbol	Name	Function Class
Notch2	notch 2	Intron
Rr581621	regulatory region 581621	1807 bp distal
Rr581622	regulatory region 581622	within coordinates
Rr581623	regulatory region 581623	1476 bp proximal
Tssr30816	transcription start site region 30816	1862 bp upstream