rs36709023 SNP Detail

Summary

• ID
  rs36709023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:17979342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTTGAT GAGAGGTTCA
  CATGCATTCC AGACTCCTAT CCAAAACATT AAGACAAAAA CCTTCCTGCT TATTGTAGAG
  AATGCAGTAG GGATAGCTGT AAAGGAGGGC TTTGATGATT TCAGGGAGGA GCATTTGAAT
  CAGGGCTGCC TGAGCCCAAA GCATCCTGAG CACCTCTGTG TTTCTCAGCT TCTCTGTACA
  R
  GGACCAGCAG CCCTCCAGCC AGCCCAGACA CTTTCAGGAT CCCCTTTCAG CCTCTTAGGA
  TCCCCCTCCA CCTGAAGTCC CAGTGATACC CTTAAGTTCT CCTTGGATTC CTGAGGTTGG
  TAGAGCTAGT AAGAGGAGCT CATCTGGCTT GGGATCTTCA AAGTAAACTC AGAAGTCTCA
  GGCAGAGAGA AGATGCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ
ss51883292	NES14902303	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		G	A
ss148438460	ENSMUSSNP228016	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ
rs36709023					SNP	A	A	G	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51883292	NES14902303	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:17979342 () rs orientation: forward

Symbol	Name	Function Class
Mill1	MHC I like leukocyte 1	mRNA-UTR
Rr642879	regulatory region 642879	1249 bp distal
Tssr64734	transcription start site region 64734	201 bp downstream
Tssr64735	transcription start site region 64735	181 bp downstream
Tssr64736	transcription start site region 64736	15 bp downstream