rs36702540 SNP Detail

Summary

• ID
  rs36702540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91179533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTTGTA ATGGGAACCA
  AGAAAACAAA ACAACCTAAC TGCTTTCAAC AAGAGACTCG TTCGGCGTCT TATAACTGAA
  CTATGGAATA TTTCTAGGTA TTGAAAAGAG ACAAAGAAAA GCCACAGGTG TTCATATGGA
  CACACCCTGT TTTCAGTGCT GTGAGGGACC TTTACAGGAC ACGTCTCCAT ATCAAGTTCC
  R
  GAACACCCTG AAATCACACT GTGAATGTGT TCAGAGAGTA ACTCCATTAA GGAAACAGGA
  GGCCATCCAG GGGCCCCAGG AGAGGAGATC TGGGTGGGAC ATGCTCGCCT GCCATAGGAC
  CCCCTTCCTT TATGATCACG TAGCTTCAGT CAGCCTCCAA AGCCCAAGAT GTTCTCTCTC
  CTACTGGCTA CATTTTTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51363715	NES13733016	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36702540					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51363715	NES13733016	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91179533 () rs orientation: forward

Symbol	Name	Function Class
Rr634420	regulatory region 634420	998 bp distal
Rr634421	regulatory region 634421	178 bp distal