rs3669876 SNP Detail

Summary

• ID
  rs3669876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19317338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAATATACC TACCAAGTAA ATACAAAAGA AATTAAAATT
  TTTTTAAACA AAGAATCAAC TTTTAAAATA AGTATCTGAA CCCACAAATG AATACAAATC
  Y
  CACATCAACT TCCTTATAAC TCACATTTGT TATCATGAAG TTCTCTAAGC AATCTAGTTA
  AAGTAACTCA GTTTTAAAAA GTGAATTACA TTATGAATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5045839	WI_WGS_3_18995549	WI	MOUSE	f	SNP			C	T
ss45539828	mCV24211561	ABI	CRAMUS_MOUSE	f	SNP	T	C		T	C
ss134666385	ENSMUSSNP599511	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C			C
ss320678287	CHEV_3_19163174	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3669876					SNP	T	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19317338 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573966	regulatory region 573966			269 bp proximal
Rr573967	regulatory region 573967			1781 bp proximal
Tssr32690	transcription start site region 32690			1753 bp downstream
Tssr32691	transcription start site region 32691			1785 bp downstream
Tssr32692	transcription start site region 32692			1823 bp downstream
Tssr32693	transcription start site region 32693			1833 bp downstream
Tssr32694	transcription start site region 32694			1922 bp downstream