rs36691977 SNP Detail

Summary

• ID
  rs36691977
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24607867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGAAAAGG CAGGAGGAAC ACTACACCAT GTATACACAC
  ATGGAGATGC TTCAAAGACC AGAGTAAATC AGTAAGTTCT TGTAAGGATT TCCCAAGAAC
  W
  TCTTTTTATA AATAAGCCTC TTGTTGCGCA CGCGCGCGCG CGCGCGCACA CATACACACA
  CACACACACA CACACACACA CACACGGAGA GTCAGTCAGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51253615	NES13798886	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36691977					SNP	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51253615	NES13798886	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24607867 () rs orientation: forward

Symbol	Name	Function Class
Rr627250	regulatory region 627250	1231 bp distal
Rr627251	regulatory region 627251	10 bp distal
Rr627252	regulatory region 627252	276 bp proximal