rs36690066 SNP Detail

Summary

• ID
  rs36690066
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83576127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATGCAT GCATTTGAGG
  GAAATGGAAA TGTTTTGTAT AAAACGACTA TATACATGTG TGAAAGTAAA TACAATGGGC
  CGCTACACTG GGACACTAGG GATGCTGGGG CAGAGAGTTC CTTGTTTTAC TATTGTTCTG
  AATCTAGAGG CATCTTCAGG TCGCCCCGAG GTTGTGGGGA CCGTCCCGCA TTGTGTGCGA
  K
  GCATTTCGGC GCCCACATGA GCCAGCGGCA TCACGTCTGC TGTGGGAGCT GGATGTAGCT
  GTCTGTGCTG CACCAAAGAA GAAGGGTATG GTAAGGCGCT CTGTTGTAGC TTCAGTAGCC
  TTGGGTCTCC ATGTTCCCCG CGACCTTTGT TCCTTCCGCC TCCCAGAGTT CTTAGCGCAT
  CCACTCTGCA TCCCATAGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51353395	NES13744262	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36690066					SNP	T	T	T	T	T	G	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353395	NES13744262	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83576127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	within coordinates
Gm7424	predicted gene 7424	1662 bp downstream
Rr632898	regulatory region 632898	742 bp distal
Rr632899	regulatory region 632899	within coordinates
Rr632900	regulatory region 632900	283 bp distal
Rr632901	regulatory region 632901	595 bp proximal