rs36689325 SNP Detail

Summary

• ID
  rs36689325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113302427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCA CCTAAGACCA GATGAGTCCA
  Y
  TACTGCCATC TTATGGGATT CAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss51842369	NES14762176	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C	T	C	T
ss133564334	ENSMUSSNP3804720	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs36689325					SNP	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842369	NES14762176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113302427 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	606 bp downstream
Cpgi17839	CpG island 17839	800 bp proximal
Gm15492	predicted gene 15492	within coordinates
Ogg1	8-oxoguanine DNA-glycosylase 1	1532 bp upstream
Rr399830	regulatory region 399830	1119 bp upstream
Rr636489	regulatory region 636489	517 bp proximal
Rr636490	regulatory region 636490	1256 bp proximal
Tssr58194	transcription start site region 58194	1524 bp upstream
Tssr58195	transcription start site region 58195	1553 bp upstream
Tssr58196	transcription start site region 58196	1759 bp upstream
Tssr58197	transcription start site region 58197	1777 bp upstream
Tssr62435	transcription start site region 62435	1169 bp downstream
Tssr62436	transcription start site region 62436	1260 bp downstream