rs36688138 SNP Detail

Summary

• ID
  rs36688138
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31107924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTCCAC AGGCTTGGGG
  CCTGCTAAAG GCGGCACAGG CCAGAGAGTA AGGCAGCCTA GCAGAGCAAT GGGCTCTTTA
  GACCTCTGTT CTCCAATAAA AAAGACTCTT TAGGGGAGAG TTAAGGAGTA CAATCGGAAA
  ACCCTTACGA TTAGCATAGC TAATTCTAAT TTACTTATAA GAATGATTAA TGGATCTCAT
  S
  TTATCATTCT TATCCATCTT AACATTTCAC ATTTGCCCAG AGTGAATTGA ACCAGAGCAG
  TGGTCCTCAA CCCCTTCGGG GACCGAATGA CCCTTTCAAA GGGTTGCCTA AGACCATCTG
  CATATTGGGC ATTAATGATT TTTAACAGTG CCAAAATTAC AGTTATGAAA TAGCAACGAA
  AATAGTTTTA TGGTTGGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51259883	NES13793784	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36688138					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51259883	NES13793784	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31107924 () rs orientation: forward

Symbol	Name	Function Class
Gm67790	predicted gene, 67790	within coordinates
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627899	regulatory region 627899	1341 bp distal
Rr627900	regulatory region 627900	1894 bp proximal
Tssr60163	transcription start site region 60163	707 bp downstream
Tssr60164	transcription start site region 60164	728 bp downstream
Tssr60165	transcription start site region 60165	835 bp downstream