rs36685523 SNP Detail

Summary

• ID
  rs36685523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130368605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAACCGAG AGGCAGACTG
  GGAGTTATTT TAACTTGAGC CCACATAGTC TTTCTTTCTT TCTTTTTTCC CCTTGTTCCT
  AGCAGGCCCT CTAGTGGCAG CTAATGTGAA CTTTAGGTCC AACACATAAT GTCCGTATGA
  ACTGAAGCCA TTCCACTATA CTAAAGCACA GCATTTTTTG TTCATAAAAT CGTCTTAACA
  R
  CCATAGCCAG AGATCTAGAG CCCTATACTA GGAGATCGCC ACTGCTTTCT TTTGAGAATC
  TAACGAAATA TGAGTAATAG TCTTTAGAAA GGCATTTCAT GTGGACGTAT AGCCAGGAGC
  CCCCTTACTG TATATTGTCA GCAAGTACTT TGCAGCCCAC TGAGAAAACC TCATTCACCA
  GCTTTTTAGA TAAGAATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51627707	NES14660044	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36685523					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51627707	NES14660044	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130368605 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Rr585175	regulatory region 585175	1502 bp distal
Rr585176	regulatory region 585176	within coordinates
Rr585177	regulatory region 585177	1838 bp proximal
Rr585178	regulatory region 585178	1927 bp proximal