rs36684296 SNP Detail

Summary

• ID
  rs36684296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:134912522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGATCA TAACAAACGG
  ATGTCTCCTG GCTAGACAAG ACTTATGCTT TGGAAATTAG GAATGATAAC TTATAACCAA
  CATCACTCCT ATTCAAGGTG CTGGAATGTT ATAAATACAT ACAACGATTA AATTTATATA
  CAATGTATAA AATACATGAG CACAAATAAT GTGAATTGAT ATATATCTTG ATACAGTAAG
  Y
  GTCTCTACAT CCTTAGACTT GTGCCACACA AGGACTTCAG GGCGCTGCCC ACATGTGTCA
  TGGTGGTTCT GGAAGGGCTG CAGTGCCCTC TGCAGTTTCA GCAAAAGAAA ACAACTTGGT
  TGGGGAAAGA AATGAACTTG GGGAAATAAA TCAACTTGTC TCGGAAATTC ACTTTCCCTT
  CTTAGAGGGG ATGAAAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51035444	NES13892419	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36684296					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51035444	NES13892419	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:134912522 () rs orientation: forward

Symbol	Name	Function Class
Rr585670	regulatory region 585670	within coordinates
Rr585671	regulatory region 585671	80 bp proximal