rs36680119 SNP Detail

Summary

• ID
  rs36680119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130740518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCACTG AAAGCATTCT
  TCCATGCAAA ATATGCCTTG GAAAGAAAAC ACTAAACCAC ATCTGAGTGA AAATATAGGA
  AGTCAACAAA GGGGTGACTG AGCAGGGAGA GTCAGCAGGA GCGCTTTGGA GGAGGGCGCA
  GTTGGCAACT AGACCTTTCC ATTGCCCTGA CTCCAACTCT ACCCCAGTCT AGGCAAGGCT
  Y
  GAAGACTTAG CATAACAGCA TACTGCGTGC TGGGCTCCAT TCCCTGGCCC CCCAAACAGC
  CTTCCCGGCA GGATCTAAAG AAAGGCAAAA GATAGGGTAT GTCTGCAGGT CAGTTCACCC
  CACCCCCCAG CCACCCCCAC CCTCCCAGCT ACACACATAT ACAATCTGCA AGACTGAGCA
  GGGGACGGGA ACAACGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51636335	NES14654855	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36680119					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51636335	NES14654855	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130740518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13830	CpG island 13830	496 bp distal
Gm65596	predicted gene, 65596	within coordinates
Rr585244	regulatory region 585244	within coordinates
Rr585245	regulatory region 585245	513 bp proximal
Tssr35670	transcription start site region 35670	446 bp downstream