rs36678362 SNP Detail

Summary

• ID
  rs36678362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113582254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCCCACT GTCCAGCCTC
  TTAGGCCCAT CCATCATCCG CCCCGGTTTG CGCCGCGCTT CCGTGCCAGT CTTCACTTGG
  CAGGCAGTGC GCAGCCGTGT CACGGTCACG GTCGCGCTTA CTGTTGAGAG ACTCCTGCTC
  GTTGTCCATC TCCTTCAGGA AGAAGTCCGA ACCCCTTTGA TGTCATGCCT TCTATTGCTC
  Y
  CGTTTAACCA CTCCCGGCAG GTTCATTCAT CCCCGGCTCG ATTTGGTGCT AGTGCTGAGG
  GTTGTAAGGG ATGGGGCCCG CTCGGGCCTT GGGAATGGCT TTTCTAGCCC TGTATCTGCT
  TCATGGTAGG TGCTCTGGAT GCTTCTGTCT GGCTCCTCGG ATTTTACAGG GCAGATGGTT
  TCAGCAGAGT CCACTTTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51840381	NES14766158	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36678362					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51840381	NES14766158	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113582254 () rs orientation: forward

Symbol	Name	Function Class
Brk1	BRICK1, SCAR/WAVE actin-nucleating complex subunit	Intron
Cpgi17850	CpG island 17850	within coordinates
Gm67049	predicted gene, 67049	837 bp downstream
Rr636549	regulatory region 636549	511 bp distal
Rr636550	regulatory region 636550	766 bp distal
Rr636551	regulatory region 636551	547 bp distal
Rr636552	regulatory region 636552	within coordinates
Tssr58230	transcription start site region 58230	525 bp downstream