rs36677763 SNP Detail

Summary

• ID
  rs36677763
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85272784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCCAAG CTCCAAGCCC
  TTCCCCCACT CCCAGGAGGC CTGTAGGGGC TTTGGGGACA GCAATCAAAG CTGAAAAGCA
  GGACAGCAAC TCTCAGATCT CTGAGGGAGC GAAGAGAATA ATGTGGCCTC TATCCTCAAA
  CTCTGGGAGG TCCCAAGAGG CCCAGCTCAG TGGTGGTGGG GCAGGTAGCA GGCTAGAGTC
  R
  GAAAGTGGAC TTCCTTTGAC GGGTACAAAG GCACTGGAAG GTGTGTGGAC TCCTTCAGGC
  TACAGAGGGC TGGAGGTTCA AGGTCCATCC TGCAGACCCA AGGCTGAACA GAAATATCAC
  CACTAGGGAG TGAGACTACA GCCTGACTCT CTGCCCAGGG CTGCAGGGCA AATACTTCAA
  GACAGACAAG ACCTGCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51356115	NES13743923	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36677763					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51356115	NES13743923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85272784 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr633168	regulatory region 633168			1452 bp distal
Rr633169	regulatory region 633169			within coordinates
Sfxn5	sideroflexin 5			Intron
				Noncoding-Transcript-Variant