rs36676841 SNP Detail

Summary

• ID
  rs36676841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57510971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAAGAT AATTTTTGAT
  ATGTATGTAT GCATACATAC ATGTATGTGA GCCCGGGGGA AGTGCAGGCC AGTGCAAGCA
  GGCAGAGGCC TTTAGTGGTC AAGCAACATC ATCGGCCCGA TTTTTAACAC TCTTAAACTC
  CAAATTTCTT TACCACCATC AACAACAAAA CCCCAGTGCA CCCCAATAAA CAACTAAAAT
  Y
  ATCTGAAAAC CTCAGAAATG TATTTTAGGA AATCCGCACT CTTGATGCCT TTATCGCCTT
  TTAGGAGGAA AGGAAATGTT AGTTTACTGG AGAAAAGAAA ACAACAAAAC GGTCAATAAC
  TCCCTTCGGT TGTATGTGAG AGTCTGTTTT CATAGGCGAA GTGAGAATAC AGTATTGAAA
  AGTAAGTGTT ACTCAACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51315129	NES13763470	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36676841					SNP	T	C	C	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315129	NES13763470	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57510971 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17483	CpG island 17483			769 bp proximal
Cpgi17484	CpG island 17484			1545 bp proximal
Gm45193	predicted gene 45193			within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)			Intron
				Noncoding-Transcript-Variant
Rr399669	regulatory region 399669			1431 bp upstream
Rr631141	regulatory region 631141			131 bp proximal
Rr631142	regulatory region 631142			1430 bp proximal
Tssr61156	transcription start site region 61156			1382 bp downstream
Tssr61157	transcription start site region 61157			1424 bp downstream
Tssr61158	transcription start site region 61158			1436 bp downstream
Tssr61159	transcription start site region 61159			1491 bp downstream
Tssr61160	transcription start site region 61160			1513 bp downstream