rs36676462 SNP Detail

Summary

• ID
  rs36676462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83449177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGCTAGT TTCCAGGAGC
  CAGAACTGGT TCTCATGAAA ATGTGCTTTT GCATTTTAAA CAAGGCTTCA AATAAGTATT
  CTTATCTAAA TCATGTCCTT GGGAGAGTGT CTTACCGTAG CTTAAGATGT GTCAGGAATT
  CCTCTTTTGA GATTGCTTTT GTCTAAGTTA CATTTTGCTG AATATTCCCA ATCAGTCGTT
  Y
  TTATTCTCTA TGCTTTGAAG GAGAGCTTAA TTTTAGAAAC CCTTCAAACA TAATTTTGAG
  AGACATATGA GAAGGTATAG TCAAGTGTAA GTAAGACATT TATTTTTTAA GTAAAAATGT
  TACTTGTGAC ATTCATGTGT CCTGCTACCC ATCAGACTCA GGTGCTCGGC ACACAACCAC
  TTGACATGTC TTTATTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354913	NES13746954	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36676462					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354913	NES13746954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83449177 () rs orientation: forward

Symbol	Name	Function Class
D6Mit128	DNA segment, Chr 6, Massachusetts Institute of Technology 128	873 bp distal
D6Mit1006	DNA segment, Chr 6, Massachusetts Institute of Technology 1006	835 bp distal
Rr632872	regulatory region 632872	113 bp distal
Rr632873	regulatory region 632873	981 bp proximal