rs36676299 SNP Detail

Summary

• ID
  rs36676299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15286704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTGAAT AAATTTGTAC
  ACATACGTTT TATGTGGGGA GGGTTATATG TAAAGAGGAA AAAAGAATAA TCATGTAAAA
  AGGGTGAAAG TCCTCACTTG TATTAAGTAA AGAACATCTG GCAGTCCACT TCATATTTTA
  AAAAGTATTT AGCTATATTC TCTCTTTTAC TTTTAGGCTC TCCAGGCAGC AAGACAACTT
  Y
  TGTTACAGCA GCAAACCAGT GGATTGAAAT CTCCTAAGAG CAGTGAGAAG CAGAGGCCAC
  TGCAGGTTAG TAAAGCATGC CTGTCCTTGA GATCTGTTTT TAATGATGCT CATAACAACA
  ATGACAGATG TGTAAAACAT GTCATGTTTA TAGAAGTAAT TTGTGCATTT GCACATATTG
  AACCTATTAG TTCTAAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51241667	NES13798936	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36676299					SNP	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51241667	NES13798936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15286704 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Rr626656	regulatory region 626656			1112 bp distal