rs36674187 SNP Detail

Summary

• ID
  rs36674187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145409868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAGCAAA ATCTTGCCCC
  CAACAAGAGT CCTGAAAAGA CTTTTAAAGA ATTCAAGAAA TACAAAATGT ACAGTGGAAT
  CCATACTAGC TGCCTTTCTT ATAAAAAGAA CTACATACAG AATTGATCGT TTTCCCCTCA
  TCCAGTCTCA GCTTCTCCCT TCCTGCATCT TTTCTGCTCC CTTCCTCCTC ACTGGCCGCC
  Y
  GTGCTCTCGC TCTCTTTTTC CGACAGAAAA AGATTAGGCA GACTAGATTT CAAACATTCC
  AGGGCTGAAG GTTTTCAGCA AAGAGATAAG CCCCACTAAG TTTCCTTCAG AGTAGCCAGA
  TGCCTCTCGC TCCTGGCTGA TGATATTCTC TGCCAAGCTC AGGTTCACCG GCCTGGAGTA
  TGTCCTCGCC GTTCCTCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51670892	NES14639742	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36674187					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51670892	NES14639742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145409868 () rs orientation: forward

Symbol	Name	Function Class
Rr586822	regulatory region 586822	1814 bp distal
Rr586823	regulatory region 586823	within coordinates
Rr586824	regulatory region 586824	1189 bp proximal