rs3667024 SNP Detail

Summary

• ID
  rs3667024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107589037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAATGCA ACTTCCCAGG
  AGGCTTGAGC AGCAAAGATG TGTTTCCTCA CAGCGTCTGG GGAGGGGCCC GTTTCCCGCC
  ACCCCCACCC CCCAGGCCTC TCCTCTGGAC TTGTGGGTGG CCATCTTGCC TGTGTTTTTG
  TACTTCCTTC TGTGTCCCAG GCTCCTTCTC TTATAAGAAA CCAGTCTCCC TGGACTTAGG
  Y
  AACAACAGTG CTTACCCACA GTGACAGAAA GCTCTGATGG TGAAGAACCA GCCTGCTTTC
  ATCTTAGACT TAAAGCCATC TTACCGGAAA GACAAACTAG GTTTGTTCCT AATTATGATT
  AAATCTGTTT CCAAGGACTG CTATGCCCTA CCTATAATCT TACTTACAAA TGGTCCTGTA
  CTGAGTGTTC CAGGAATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5042974	WI_WGS_4_105465951	WI	MOUSE	f	SNP	T	C
ss321250542	CHEV_4_107404445	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3667024					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107589037 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
D4Mit43	DNA segment, Chr 4, Massachusetts Institute of Technology 43	1631 bp proximal
Gm70287	predicted gene, 70287	within coordinates
Rr747	regulatory region 747	1486 bp proximal
Rr597051	regulatory region 597051	34 bp distal
Rr597052	regulatory region 597052	366 bp proximal
Rr597053	regulatory region 597053	1921 bp proximal