rs3666825 SNP Detail

Summary

• ID
  rs3666825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79288823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAC TTCTCATAGC AAATAAATCA
  Y
  GGGAACACTG GTCGGAAGAT TTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5042775	WI_WGS_3_80051517	WI	MOUSE	f	SNP	T							C
ss45457336	mCV24555826	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss47029903	NES10780959	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T	T		C	T	T	C		T
ss135371765	ENSMUSSNP5351316	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss320811396	CHEV_3_79185438	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3666825					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47029903	NES10780959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79288823 () rs orientation: forward

Symbol	Name	Function Class
Rr578509	regulatory region 578509	1797 bp distal
Rr578510	regulatory region 578510	1007 bp distal
Rr578511	regulatory region 578511	within coordinates
Spmip2	sperm microtubule inner protein 2	Intron