rs3666818 SNP Detail

Summary

• ID
  rs3666818
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151478477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTGGAT GGTCTCAGGT
  TCAGGGGTGG GGCTTGGGGG AGGGTAGAGT TAATATTAAG GAAAGGACTG TATTACCAAG
  AAAGATCTGG GGCTTGTTGC AGTCTTCATC AAAATAACAA TGGTGCTCCT CACAGAACTA
  GAGAAAACAA TCTTAAATTT CACATAGAAG CACAAAAGAC CTCAAGTAGC AAAAGTGGCT
  K
  AAGCAGAAGG AACAACATTA GATATATTAA TACCAGGTTT CTGGTTTTAA TACAGATCCA
  TAGCAGTAAA ATGGCTGGGA CTGATTCAAA AGCAGACACA CTGATCAATA GGTCATTGGA
  CCCACAGTCA CCTAATTTTT GGCAAGAATG TTCTTAAAAT AGAGACAACA GAGAGCCTCC
  AGCCCAACCA TGCTGAGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5042768	WI_WGS_3_152358136	WI	MOUSE	f	SNP	G	T
ss321026858	CHEV_3_151435804	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3666818					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151478477 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	1781 bp distal
Rr587416	regulatory region 587416	1454 bp distal
Rr587417	regulatory region 587417	1523 bp distal