rs36667095 SNP Detail

Summary

• ID
  rs36667095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152019677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTACATC CATCTACCCA
  TACCCCCGCC AGACTGTAAA ATCATCTTAG AATAGTCCTT TTAAAGAGCT GGAATAGAAA
  TACAATAATA AACAGAAACG TGAGGCAGCA GTTGCCTACT TCACCATGAC ACCGCAATCC
  CTCATGAAAC TAATATAATC TGAATCTCAC ACCTGCTGAG CAGGGCATGG CAGGCTGATG
  R
  CGCTGGCTCC TGCTAGCCAA GCTGCCCTGA GCCGCAGCAC CAGCCCTCCG TTCCCTTTCT
  GAGACCAGGG AACACAAAGA TGACCAGTCT GTTCCTGAAC TTACTACGGA AGCCCAGGCA
  GGCCTTGGCA TTGTGGTCTC TTCCTGCTGT GGCCGCCCAG GCTGGCATTC CAGGCTAATT
  AGCCGTTCCA GGCTAATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51059810	NES13424288	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A		A	A		G
ss136102200	ENSMUSSNP725190	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321028625	CHEV_3_151977004	CHEVERUD	SCREENING_POP	f	SNP								A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36667095					SNP	G	G	A	G	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51059810	NES13424288	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152019677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			534 bp proximal
Rr587524	regulatory region 587524			1553 bp proximal
Rr587525	regulatory region 587525			1771 bp proximal
Rr587526	regulatory region 587526			1815 bp proximal