rs36664335 SNP Detail

Summary

• ID
  rs36664335
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53059399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTCTTT ATCATTTTTT
  TCCTTGTCTG GCTTTCTTTA GTGTCTCCCA CTGTACTCTC TAAGCCCCAC TCATTATAAA
  TGGGACGTTA TCAGTGGGTC ATTTCTGGAG TGACCGTCAT GGAGACTGTC CAGCCTCCAG
  ACCCTACTTC CTGCTCAGAC AAACTTAGAA CAAGAGGCAG AGGTTTGGCC AATCAGAGAT
  S
  ATTCCTCTAA GCTTAGAATC TGTAATACAG ATCCCCTCAG TAACAATAGC CTTCCCATTT
  CTTTGCTTCC AGCAAATTCC AAATGCCAGT GACCACACCC AAAGTCTTTT CCTAGCGCTA
  GTTCTGAAAT CTAAATTATT TGCTGTCTTG TCTCAGTAGC TTTCTTTGGA CCTAGCAGCA
  GCCACCTTTA GACCAGCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51219819	NES14311179	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36664335					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51219819	NES14311179	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53059399 () rs orientation: forward

Symbol	Name	Function Class
Gm30234	predicted gene, 30234	within coordinates
Rr549372	regulatory region 549372	1043 bp distal
Rr549373	regulatory region 549373	within coordinates