rs3666238 SNP Detail

Summary

• ID
  rs3666238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151478378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAGTTTG AAGCTCACCA
  AGCTTCAAAA ATATAACTAG AGACAGACCT ACAAGGGGGG GAAAGCTCAC TACTATGAAA
  ACTTTAAAAC ATTGAGGAAG AAACTGGATG GTCTCAGGTT CAGGGGTGGG GCTTGGGGGA
  GGGTAGAGTT AATATTAAGG AAAGGACTGT ATTACCAAGA AAGATCTGGG GCTTGTTGCA
  R
  TCTTCATCAA AATAACAATG GTGCTCCTCA CAGAACTAGA GAAAACAATC TTAAATTTCA
  CATAGAAGCA CAAAAGACCT CAAGTAGCAA AAGTGGCTTA AGCAGAAGGA ACAACATTAG
  ATATATTAAT ACCAGGTTTC TGGTTTTAAT ACAGATCCAT AGCAGTAAAA TGGCTGGGAC
  TGATTCAAAA GCAGACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5042184	WI_WGS_3_152358037	WI	MOUSE	f	SNP	A	G
ss321026856	CHEV_3_151435705	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3666238					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151478378 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	1682 bp distal
Rr587416	regulatory region 587416	1355 bp distal
Rr587417	regulatory region 587417	1424 bp distal