rs36659417 SNP Detail

Summary

• ID
  rs36659417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:98992898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTACACAA ATTAATTAAA
  ATATAGCAAG GGATGACCTT TGATTGTACA ACAAAGCTGA GGTGCCCTTG CAGGGTCTGC
  TCGGCCTCTA GCTCAGGCTT TCTAAATTAT GGGAGGTGGG GCAAGGAGGG TCCCACACTT
  GGATGCTTCA ACGTGTTGGG AACGTCCTTC AAGCCCTATC CTTATCGAGT TATACGGTAG
  Y
  GACTTCTTTC CCTATAGTGT CCATCTGTTG GGTTTAGGTT GCTTCTTCAG TCTGAGTCTT
  ACGACCCTGA GATGCAAGGA TAGCCACAAG TGTATCTGAG CATCAACGTG TGTGGAGAAA
  GTAAACTCTG CTTGGAAATT TATGAACTCC AAAATGCTTC TTTCCATATC TAAGGAAAAA
  ATACCTTTAA AGGTAAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51381379	NES13732178	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36659417					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51381379	NES13732178	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:98992898 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp1	forkhead box P1			Intron
				Noncoding-Transcript-Variant
Rr406577	regulatory region 406577			1336 bp distal
Rr635319	regulatory region 635319			1336 bp distal