rs36657646 SNP Detail

Summary

• ID
  rs36657646
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135013060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATATTTAAA ATCTATGTTA AAATCTCCTA ACAAACTCCA
  ACTCCGATTT AAACGGGGAG GGGGGGGGAG GGAGGAAGAC ACCAAACTGG AAGTCAGAAA
  W
  AAAAAATTAA ATGGCTGATG GGAGGGAGCG TTACAGTAAA ACAACATAGC AAGAGGCTCA
  CAGTGACAGA CACTGGCCCA AGGTTTCACT CCGCCATTTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51034008	NES13903050	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T	A	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36657646					SNP	T	T	A	T	T	T	T	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034008	NES13903050	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135013060 () rs orientation: forward

Symbol	Name	Function Class
Gm46826	predicted gene, 46826	within coordinates
Rr585684	regulatory region 585684	20 bp proximal
Rr585685	regulatory region 585685	457 bp proximal
Slc9b2	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	23 bp upstream
Tssr31804	transcription start site region 31804	382 bp upstream
Tssr31805	transcription start site region 31805	412 bp upstream