rs36657643 SNP Detail

Summary

• ID
  rs36657643
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113302789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGAGACAA AAGACCCAGT TTGTTTGATG TTGGTTAATA
  GTGTTCTAGC AGGTGTGCTG TGCCTTTCTG TAGACACACA CACACACACA CTAATCAGCA
  W
  CCAGCCCTGC CCTTGAGTCT GTAGTCCAAT AATTTAGGCA CAACCCGAAA ATTTCTCTGC
  TTGATGGAAA ATGCCCTAGT GTGTCAAACT AGTGTCCGAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss51842363	NES14762179	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs36657643					SNP	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842363	NES14762179	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113302789 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	968 bp downstream
Cpgi17839	CpG island 17839	438 bp proximal
Gm15492	predicted gene 15492	within coordinates
Ogg1	8-oxoguanine DNA-glycosylase 1	1170 bp upstream
Rr399830	regulatory region 399830	757 bp upstream
Rr636489	regulatory region 636489	155 bp proximal
Rr636490	regulatory region 636490	894 bp proximal
Tssr58194	transcription start site region 58194	1162 bp upstream
Tssr58195	transcription start site region 58195	1191 bp upstream
Tssr58196	transcription start site region 58196	1397 bp upstream
Tssr58197	transcription start site region 58197	1415 bp upstream
Tssr62435	transcription start site region 62435	807 bp downstream
Tssr62436	transcription start site region 62436	898 bp downstream