rs36656842 SNP Detail

Summary

• ID
  rs36656842
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143870895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACCTAAGC TTGGAAAACA
  GAGTTTAGAG AAAGGTTAAT AATAGGACAC ACAGAGACAC ACAGACAACA ATAACAACAA
  CAGCAACAAC AAAATCAAAC AAGCCCTAAA GCTTTCTCCC TAGACTCCCA AGGCAAAAGG
  TCTGAGGGCC TAAGCGCAGC ACTTAAGAGC TGGTTCGTAG GGAGAAGCTG AGTTCCTCTG
  K
  CTCTTGTACC TAGCAAGGCC ACTTGATCAA CTCAGGGTCA TTCCTGGGGC CTGGTGCAAT
  GCAAAACCTG GAATGGACTT CCGAGCTCAG CCAATTCAAC CTCCTCTGCA CATTTCACAC
  AGTTGAACTT AGAGCACTCC AGCACACTAA AGTCCCTCCC CCGTCTAATT AGAAAGAGAC
  AGACTAAGGA CCAAGGTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51655832	NES14643869	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36656842					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51655832	NES14643869	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143870895 () rs orientation: forward

Symbol	Name	Function Class
Gm34162	predicted gene, 34162	within coordinates
Rr586590	regulatory region 586590	991 bp distal
Rr586591	regulatory region 586591	within coordinates