rs36656550 SNP Detail

Summary

• ID
  rs36656550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69769445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT AGTTTGCACC TCTCTTGGTA
  Y
  CCCAGTTTGC AGGAGGTCTT CCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50977768	NES13927092	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36656550					SNP	T	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977768	NES13927092	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69769445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	691 bp distal
Rr578230	regulatory region 578230	1682 bp distal
Rr578231	regulatory region 578231	1828 bp distal
Rr578232	regulatory region 578232	1779 bp distal
Rr578233	regulatory region 578233	778 bp distal
Rr578234	regulatory region 578234	within coordinates
Tssr33559	transcription start site region 33559	717 bp upstream